MmuEX6043164 @ mm9
Exon Skipping
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120724016-120784813:+
Coord C1 exon
chr14:120724016-120724634
Coord A exon
chr14:120778372-120778536
Coord C2 exon
chr14:120784613-120784813
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTAGATTGTCCGTTTTGCAGGGC
3' ss Score
6.17
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCCATCGTATTAAAGCCACTTTATTAAGGAGGGGTGTATCTGCAAAACAGTCAAGAGACTAGAACCCTGGGAGCCAGAGATGACAGTGAGCACGCACTGCTTGTGGCTCACAGTCTTCCAGTGGGGCCTATCGATCGGTGACTGACTTCCTGCTTGCTGACACATTCCCCCTCCCCGGTTTCCTGGATTGGACTGCATTAAAGAATTCACTGCTTACCTTCAAACTTACATGTTGGAGTTTTCACGGCGGTTGTTTTGAGATCATTGAGACTCGGATTGATTTCGACATTTAACCGAAAGGAACAGAGCCCAAAGTAGTTCTCATCATGGCCTTGAACGTTGCCCCCGTGAGAGACACAAAGTGGCTGACGCTGGAGGTCTGCAGACAGTACCAGAGAGGAACGTGCTCACGCTCCGACGAAGAATGCAAGTTTGCTCACCCCCCCAAAAGTTGCCAGGTTGAAAATGGAAGAGTAATTGCCTGCTTTGATTCCCTCAAG
Seq A exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCGACACACTTAAAAACCCAGCTAGAGATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACGCCGCTCCATCCTGTG
Seq C2 exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCTATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTTGGGTTAGTCCCAACAGAGGTTCTACCCACTACACCGGTCATTGTTCCCGGAAGTCCACCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.142 A=0.714 C2=0.843
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTCTGCAGACAGTACCA
R:
CCGGTGTAGTGGGTAGAACCT
Band lengths:
248-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: