DreEX0045306 @ danRer10
Exon Skipping
Gene
ENSDARG00000018460 | mbnl2
Description
muscleblind-like splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9582]
Coordinates
chr1:1981381-2038542:+
Coord C1 exon
chr1:1981381-1981837
Coord A exon
chr1:2037708-2037872
Coord C2 exon
chr1:2038342-2038542
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTGATCTTTCTTGGTTTAGGGT
3' ss Score
9.61
5' ss Seq
GTGGTACAC
5' ss Score
0.92
Exon sequences
Seq C1 exon
CGCAACCGTCTGGCTCAAGAACGTTTGGAGACCTGGAGCATGTTCTTATTGTCGCGCCAGTGTTGTGCACCTGGGACTAAATGACTGATGAACAACTTGGCAGAGATTGACAGCTTCACTGATAGCGGGCATCTCCAATGCGACAGCCACGGGGGCTCTGAATGTGACATCTCTATTTAAAGGGCCTCGCCAAACAAACTGAGACCAACCTCAAAAGTACAGCAACACACAAACGCGCAGACTATTTCAACCCAAATCAACAGACAACATTCACAACACAACTATGGCTTTAAACATCGCATCGATACGAGACACAAAATGGCTGACTCTGGAGGTGTGCCGGCAGTTTCAGAGAGGGACGTGTTCGCGCAGCGACGAGGAATGCAAATTCGCACATCCGCCCAAAAGCTGCCAGGTGGAGAACGGACGGGTGATCGCCTGCTTCGACTCGCTGAAG
Seq A exon
GGTCGGTGTACGAGAGAAAACTGCAAGTACCTTCATCCACCGGCACATCTGAAGACGCAGCTGGAAATCAACGGACGCAACAACCTCATCCAGCAGAAGACGGCGGCAGCCATGCTGGCACAGCAGATGCAGTTCATGATCCCTGGCACCACCATGCAACCAGTG
Seq C2 exon
CCTACATTTCCTGTGAGTCAAGGTCTGGGCTCGAACCCAGGTCTGAGTTACGCGCCGTATCTGACTCCCATGAGCCACGGCATGGGTCTGGTCCCCACAGAGATGCTCCCCAGCACCCCAGTCATCGTCCCGGGCAGTCCTCCAGTCAGCGTGCCCAGCTCGTCCTCCACGCAGAAACTACTGCGCACAGACAAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018460_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.125 A=0.385 C2=0.657
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF149201=MTBP_C=PU(29.8=67.2),PF0064219=zf-CCCH=PU(11.1=4.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCAGACTATTTCAACCCA
R:
CCCAGACCTTGACTCACAGGA
Band lengths:
253-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]