BtaEX6059258 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43427507-43440412:+
Coord C1 exon
chr15:43427507-43427703
Coord A exon
chr15:43429969-43430109
Coord C2 exon
chr15:43440228-43440412
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATATCTTTTCCTTTTATAGCTC
3' ss Score
10.08
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTATCCTGGCCTTTTAGTTGTACCTCAAGCTGTACAGGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGACACAATCGCCTGCCTGTTGTATGTTGGAGAAACTCAAGAAGCAGTACCCTGCTCCTCCGATCTGGAGGATTCCATGGAAAGGGAGTGGTTGGCCTTTTTAAGTCTCAGAACTCCCCTCAGGCAG
Seq A exon
CTCCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAACAAGAAAAGTACTTGCAAGCATTACTGAGTGCAGTTTCTGTCCATCAGAAACTCAGTGGCAATAACCCTCTTACTGTCAGGCCAGCACTTGCTCTGTCTCCAG
Seq C2 exon
GTGTTTGGGCAAGTCTTCGCTCTAGCACTCGCCTGATCAGCTCTCCAACATCCTTCATTGATGTTGGCGCCCGGCTGGCAGGCAAGGATCACTCGACCTCCTTCAGTAACAGCACTTACCTGCAAAACCAGCTCTTGAAACGTCAAGCAACCCTTTACATATTTGGTGAGAAGTCACAGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981-'42-63,'42-58,43-63=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(15.2=100)
A:
PF066029=Myotub-related=PD(22.4=77.1)
C2:
PF066029=Myotub-related=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCCTGTTGTATGTTGGA
R:
GCTGGTTTTGCAGGTAAGTGC
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]