RnoEX0078166 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174982387-174993819:-
Coord C1 exon
chr1:174993623-174993819
Coord A exon
chr1:174991200-174991340
Coord C2 exon
chr1:174982387-174982461
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTTGTATTGTAGTTT
3' ss Score
8.26
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTATCCTGGCCTTTTAGTCATACCTCAAGCTGTACAAGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGGCACAATCGCCTGCCCGTCGTATGTTGGAAGAATTCAAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTTGTTGGTCTGTTCAAATCACAGAACTCCCCTCAAGCCG
Seq A exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCCTATTGACTGCAGTTATTGTCCATCAGAAACTCAGAGGCAACAGTACTCTTACTGTCAGGCCAACACTTGCTCTGTCCCCAG
Seq C2 exon
TGCATGGGTACAGAGACAAATGTTTCACTCAGTCAAATTCCAAATCTTCAGCTAAGGAACCAGTTCATAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812-'51-61,'51-58,52-61
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.141 C2=0.167
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(14.4=100)
A:
PF066029=Myotub-related=PD(23.8=83.3)
C2:
PF066029=Myotub-related=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTTTTAGTCATACCTCAAGC
R:
TGAACTGGTTCCTTAGCTGAAGA
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]