GgaEX6036914 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8621450-8626963:+
Coord C1 exon
chr5:8621450-8621646
Coord A exon
chr5:8625686-8625823
Coord C2 exon
chr5:8626868-8626963
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTGACTGTTTAGCTC
3' ss Score
6.85
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTATCCTGGGCTTCTGGTAGTACCTCAGTCTGTTCAAGACAGCAGTTTGCAGAGAGTTGCTCGCTGTTACCGTCACAATCGCCTACCAGTTGTGTGCTGGAGAAACACAAAAAACAGTTCTCTTCTACTTAGATCTGGGGGCTTTCATGGCAAAGGTGTTGTTGGCCTCTTCAAATCCCAAAACACACATACTGCAG
Seq A exon
CTCCTGCTTCTTTAGAATCTTCGAGCAGTATAGAACAGGAAAAATACCTTCAAGCCTTACTGAATGTGATATCCGTCCACTGCAAAATGAATGGCAGTAATACTCTCACTGTTAGACCAACAATTGCTCTATCACCAG
Seq C2 exon
GCACTGACAGGAGGGCTTCAAGAATGTCTACTGTGTTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAATCTATCCAATAGCTTTGCTCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'41-53,'41-51,43-53=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.030
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(14.3=100)
A:
PF066029=Myotub-related=FE(10.0=100)
C2:
PF066029=Myotub-related=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCTTCTGGTAGTACCT
R:
TGTCCTGGCACTACCTGCTTA
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]