GgaEX6036914 @ galGal3
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
NA
Coordinates
chr5:10142314-10152943:+
Coord C1 exon
chr5:10142314-10142510
Coord A exon
chr5:10146550-10146687
Coord C2 exon
chr5:10152762-10152943
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTGACTGTTTAGCTC
3' ss Score
6.85
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTATCCTGGGCTTCTGGTAGTACCTCAGTCTGTTCAAGACAGCAGTTTGCAGAGAGTTGCTCGCTGTTACCGTCACAATCGCCTACCAGTTGTGTGCTGGAGAAACACAAAAAACAGTTCTCTTCTACTTAGATCTGGGGGCTTTCATGGCAAAGGTGTTGTTGGCCTCTTCAAATCCCAAAACACACATACTGCAG
Seq A exon
CTCCTGCTTCTTTAGAATCTTCGAGCAGTATAGAACAGGAAAAATACCTTCAAGCCTTACTGAATGTGATATCCGTCCACTGCAAAATGAATGGCAGTAATACTCTCACTGTTAGACCAACAATTGCTCTATCACCAG
Seq C2 exon
GTGTGTGGGCCAGTCTTCGTTCAAGCAACCGATTTATCAACGCTCAGACTCCATTCATTGATGTTGGTGCAAGACTTGCAGGGAAAGATAATACCACTTCCTACAGCAGCACTTTTTTGCAGAGTCAGCTTTTGAGACGTCAAGCAGCCCTGTATATATTTGGAGAAAAATCTCAGTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'28-36,'28-33,29-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(15.3=100)
A:
PF066029=Myotub-related=FE(10.7=100)
C2:
PF066029=Myotub-related=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGTTACCGTCACAATCG
R:
AGTGCTGCTGTAGGAAGTGGT
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]