HsaEX0056319 @ hg38
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:9816840-9832420:-
Coord C1 exon
chr11:9832224-9832420
Coord A exon
chr11:9829356-9829496
Coord C2 exon
chr11:9816840-9817024
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATATATTTTCCTTTTATAGCTC
3' ss Score
9.44
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTATCCTGGCCTTTTAGTCGTACCTCAAGCTGTACAGGACAGTAGTTTACCAAGAGTAGCTCGCTGCTATCGACACAATCGCCTGCCTGTTGTATGTTGGAAGAACTCAAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTCGTTGGTCTTTTCAAATCTCAGAACTCCCCTCAGGCCG
Seq A exon
CTCCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAACAAGAGAAATACTTGCAAGCCTTACTGAATGCTGTTTCTGTCCATCAGAAACTCAGAGGCAACAGCACTCTTACTGTCAGGCCAGCCTTTGCTCTATCTCCAG
Seq C2 exon
GTGTGTGGGCAAGTCTTCGCTCTAGCACTCGCTTGATCAGCTCTCCAACATCCTTCATTGATGTTGGCGCCCGGCTGGCAGGCAAGGATCACTCGGCCTCCTTCAGTAACAGCAGCTACCTACAAAACCAGCTCTTGAAACGGCAAGCAGCCCTTTACATATTTGGTGAAAAGTCGCAACTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812_MULTIEX2-3/7=2-7
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(15.2=100)
A:
PF066029=Myotub-related=PD(23.8=83.3)
C2:
PF066029=Myotub-related=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGCTGCTATCGACACAAT
R:
TGTTACTGAAGGAGGCCGAGT
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development