DreEX0064265 @ danRer10
Exon Skipping
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66893668-66905611:+
Coord C1 exon
chr7:66893668-66893864
Coord A exon
chr7:66899986-66900123
Coord C2 exon
chr7:66905528-66905611
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTTTTTGATACCAGCTC
3' ss Score
5.18
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTATCCTGGTCTCCTGGTGATTCCTCACACTGTGCAAGACAGCAGTCTCCAGAAGGTGTCCCGCTGCTACCGGCACAACCGTCTGCCGGTCGTGTGTTGGAAACACCCTCGCACCAAAGCCGTTTTACTCCGTTCAGGAGGTTTCCATAGCAAGAGTGTGGTTGGCCTTTTCAAGTCTCAGAATCCTTCGTCAGCAG
Seq A exon
CTCCAACTTCCTCCGATACCTCCAGCAGTCTGGAACAGGAGAAGTATCTGCAAGCCATCCTCAGCTCTATCCCCATCTACTTTAAACCCAACGGCAGCAACACGCTCACCAACCGCTCTCTCATCGGCTTGTCCCCAG
Seq C2 exon
CAAGCGAACGCAGGGCATCGAGAATACCAAAGATGGCCCCTGTCCATTTGGACATTTCCTTCACCAATAGCTTCACCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460-'29-32,'29-31,30-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.319 C2=0.069
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(13.7=100)
A:
PF066029=Myotub-related=FE(9.5=100)
C2:
PF066029=Myotub-related=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCTCCTGGTGATTCCT
R:
CAAATGGACAGGGGCCATCTT
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]