MmuEX6013143 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117491401-117495303:-
Coord C1 exon
chr7:117495107-117495303
Coord A exon
chr7:117492369-117492509
Coord C2 exon
chr7:117491401-117491496
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTTGTATTACAGTTT
3' ss Score
8.61
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTATCCTGGCCTTTTAGTCATACCTCAAGCTGTACAAGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGACACAATCGCCTGCCCGTCGTATGTTGGAAGAACTCGAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTTGTTGGTCTATTCAAGTCACAGAACTCCCCTCAAGCCG
Seq A exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCTTATTGACTGCAGTCATTGTCCATCAGAAACTCAGAGGCAGCAGTACTCTCACTGTCAGACCAGCACTTGCTCTGTCCCCAG
Seq C2 exon
GGACTGAAAGGAGGTCTTCAAGAATGTCCACTGTGCTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAACCCATCCAATAGCTTTGCTCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'40-44,'40-42,41-44=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.338
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(14.4=100)
A:
PF066029=Myotub-related=PD(30.1=93.6)
C2:
PF066029=Myotub-related=PD(9.4=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACCAAGAGTAGCCCGCTG
R:
CGAGCAAAGCTATTGGATGGGT
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: