MmuEX6013143 @ mm10
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:110339890-110351789:-
Coord C1 exon
chr7:110351593-110351789
Coord A exon
chr7:110348855-110348995
Coord C2 exon
chr7:110339890-110340074
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTTGTATTACAGTTT
3' ss Score
8.61
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTATCCTGGCCTTTTAGTCATACCTCAAGCTGTACAAGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGACACAATCGCCTGCCCGTCGTATGTTGGAAGAACTCGAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTTGTTGGTCTATTCAAGTCACAGAACTCCCCTCAAGCCG
Seq A exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCTTATTGACTGCAGTCATTGTCCATCAGAAACTCAGAGGCAGCAGTACTCTCACTGTCAGACCAGCACTTGCTCTGTCCCCAG
Seq C2 exon
GCGTATGGGCAAGTCTTCGTTCCAGCACCCGTTTGATCAGCTCCCCGACATCCTTCATTGATGTTGGTGCCAGGCTGGCAGGCAAGGACCACTCAGCCTCCTTCAGTAACAGTACCTACCTACAAAACCAACTCTTGAAACGACAAGCCGCCCTTTATATATTTGGTGAAAAGTCACAGCTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'76-72,'76-66,77-72
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.110 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(14.4=100)
A:
PF066029=Myotub-related=PD(24.3=85.4)
C2:
PF066029=Myotub-related=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTACTCTGCTCCTCCGAT
R:
ATAAAGGGCGGCTTGTCGTTT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types