BtaEX6062811 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54356867-54376278:+
Coord C1 exon
chr14:54356867-54357049
Coord A exon
chr14:54360524-54360700
Coord C2 exon
chr14:54376099-54376278
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTGACCATTTTGTTTTATAGCTG
3' ss Score
8.62
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGATGCTACTGGTACATGTGGGGATCCAGGTACTCCTGGTCACGGTTCTAGACAGGAAAGCGATTTCCGAACCAAGAGTTCTGTACGCTTTGCCTGTGATACTGGTTATATCCTTCATGGTTCAGAAGAAAGAACATGTTTACCCAATGGCAGTTGGACTGGAAGGCAGCCCGAATGCAAAG
Seq A exon
CTGTACAGTGTGGTAACCCTGGGACAACAGCCAATGGAAAAGTCTTTCGGATTGATGGCACAACATTTTCTAGTTCAGTCATTTATTCCTGCGTGGAGGGATATATTCTCTCTGGACCTTCAGTTAGGCAGTGCACAGCCAATGGAACGTGGTCTGGAACTTTGCCTAACTGTACAA
Seq C2 exon
TAATCAGTTGTGGAGACCCAGGTATACCAGCCAATGGACTGAGATATGGAGATGATTATGTGGTTGGACAGAATGTTTCTTACATGTGCCAGCCAGGCTATACAATGGAATTAAATGGTTCAAGAATCAGGACTTGTACAACTAATGGCACATGGAGTGGAGTCATGCCAACTTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'56-61,'56-60,57-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTCCTGGTCACGGTTCT
R:
CCTGGCTGGCACATGTAAGAA
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]