HsaEX6082018 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112265411-112287246:-
Coord C1 exon
chr8:112287064-112287246
Coord A exon
chr8:112281174-112281350
Coord C2 exon
chr8:112265411-112265590
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTAAACACTTTGTTTTATAGCTG
3' ss Score
8.11
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGATGCTACTGGGACATGTGGCGATCCAGGTACTCCCGGCCATGGCTCTAGACAGGAAAGCAATTTCAGAACTAAAAGTACTGTACGTTATGCTTGTGATACTGGTTACATCCTTCATGGCTCAGAAGAAAGAACATGTTTAGCTAATGGCAGTTGGACCGGAAGGCAGCCAGAGTGCAAAG
Seq A exon
CTGTGCAGTGTGGTAACCCAGGAACCACAGCCAATGGGAAAGTCTTCCGAATTGATGGCACAACATTTTCTAGTTCAGTCATTTATTCCTGCATGGAGGGATACATCCTTTCTGGACCTTCAGTTAGACAGTGCACAGCCAATGGAACATGGTCTGGAACTTTACCTAACTGTACAA
Seq C2 exon
TAATCAGTTGTGGAGACCCAGGTATACCAGCCAATGGACTGAGATATGGAGATGATTATGTGGTTGGACAAAATGTTTCTTACATGTGCCAGCCAGGCTACACGATGGAATTGAATGGCTCCAGAATCAGGACTTGTACAATTAATGGCACATGGAGTGGAGTAATGCCAACTTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'99-99,'99-97,100-99=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGGCTCTAGACAGGAA
R:
AATTCCATCGTGTAGCCTGGC
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains