DmeEX6001954 @ dm6
Exon Skipping
Gene
FBgn0001083 | fw
Description
The gene furrowed is referred to in FlyBase by the symbol Dmelfw (CG1500, FBgn0001083). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is X:11992915..12003914. Its molecular function is described by: carbohydrate binding. It is involved in the biological process described with 6 unique terms, many of which group under: biological regulation; cell-cell adhesion via plasma-membrane adhesion molecules; eye morphogenesis; regulation of biological quality; homophilic cell adhesion via plasma membrane adhesion molecules. 38 alleles are reported. The phenotypes of these alleles manifest in: sensory system neuron; pupal spiracle; ovary; excretory system; epithelial cell. The phenotypic classes of alleles include: fertile; increased mortality; phenotype; visible. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed during late pupal stages.
Coordinates
chrX:11994994-11995871:-
Coord C1 exon
chrX:11995463-11995871
Coord A exon
chrX:11995185-11995364
Coord C2 exon
chrX:11994994-11995120
Length
180 bp
Sequences
Splice sites
3' ss Seq
AATATTTTACTTCGATACAGATA
3' ss Score
6.2
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATCATCTCGTGCGGTTTGGGCGGCGAGTGGTCCAGCAAGACGCCCTCGTGCAGATTCGTCGATTGTGGTGCACCGGCACGACCAAATCGTGGCATTGCCATCCTGCTGAACGGCACCACCACCGTCAATTCGGTGGTTAAATACGAGTGCGACGAGGATCATTGGCTGGACGGGCAGTCGGAGCTCTATTGCACCCGGGAAGGGAAGTGGTCGGGTGAGGCGCCCGTCTGTGAACTGGTCACCTGCGAGACGCCATCGGTGCCATCCGGTTCGTTTGTCATTGGCTACGATTACAATGTCCATTCGAAGATCCAGTACAACTGCGATCCCGGTCACATTATGCACGGCACTCCGGTGCTCGAGTGCCTGGACTCCGGGGAATGGAGTGCCGATGCGCCCTACTGCGAAT
Seq A exon
ATATCGACTGCGGCACAATCCTGCCCATTCCCTATGGCAGCCACAAGTACGTGACGAATACCACCTATGTGGGCTCCGAAGTGGTCTTCAGCTGCTCCCAATCGCACAAACTGAGCGGAGTCCTCAAGCGCACGTGCCTGGAATCGGCTGTCTGGAGCGATGCGTCGCCCAAGTGCGAGG
Seq C2 exon
AGATTCGCTGTCCGGAACCGAAACTGGCTGCGCACAGTCTGCTCTCCGTCACCGGAAATGATCGCATGTATGGAAGGACACTTATCCGCACCTCCGAATCCTCGCAGAACACAGCTCAAACCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0001083-'9-17,'9-16,10-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(29.6=11.7),PF0008415=Sushi=WD(100=40.9),PF0008415=Sushi=WD(100=39.4)
A:
PF0008415=Sushi=WD(100=91.8)
C2:
PF0008415=Sushi=PU(51.3=90.7)
Main Inclusion Isoform:
FBpp0073424

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0111718, FBpp0309601
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCGGTTCGTTTGTCAT
R:
AGGATTCGGAGGTGCGGATAA
Band lengths:
251-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)