GgaEX6022143 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139012916-139016455:-
Coord C1 exon
chr2:139016273-139016455
Coord A exon
chr2:139015011-139015187
Coord C2 exon
chr2:139012916-139013095
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTGATATTTTCCTTTATAGCTG
3' ss Score
9.6
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGATACAGCTGGTTCTTGTGGTGATCCAGGTATCCCAGGCCATGGGTCTAGGGAAGAAAACAATTTTAAAATTAAAAGCACAGTACATTTCAGCTGTGATATTGGATACATTCTCCATGGCTCAGAAGAAAGAACATGTCTGGCAAATGGAAGTTGGACTGGGAGACAACCTGAATGTAAAG
Seq A exon
CTGTACAATGTGGTAATCCAGGGACAACTGCTAATGGAAAAGTATTTCGTATTGATGGAACTACATTCTCTAATTCAGTAATTTATTCATGTATGGAAGGATACATACTTTCTGGATCATCTGTAAGACAATGTACTGCCAATGGAACATGGTCTGGATCCTTGCCAAACTGCACAA
Seq C2 exon
TTATCAATTGTGGAGATCCAGGAGTTCCAGCAAATGGCATGAGATATGGTGATGATTATGTGGTTGGACAAAATGTTACTTATATGTGCCAACCTGGATATACAATGGAATCAAATACCTCCTCCATTCGCACTTGTACTAGCAATGGCACATGGAGTGGATCAATCCCAACATGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'58-60,'58-59,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAGTACATTTCAGCTGTGA
R:
ACAAGTGCGAATGGAGGAGGT
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]