DreEX6042882 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47677575-47690869:-
Coord C1 exon
chr16:47690687-47690869
Coord A exon
chr16:47682747-47682923
Coord C2 exon
chr16:47677575-47677754
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGTCTCCTATAGCTG
3' ss Score
11.69
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGATAAACGGGGAGCGTGTGGAGATCCAGGGACTCCGGCTCATGCCACCCGAGAGGAGAGCAGTTTCCAGCAGCACGCCAAAGTTCGCTTCACCTGCTCCACGGGTCACACTCTCTACGGCTCGGCTGAGCGGATCTGCTTCCCCAACGGCACCTGGTCCGGCCGACAGCCCACCTGCAAAC
Seq A exon
CTGTTCAGTGTGGGAATCCTGGGACTCCGGCTAATGGACGTGTGTCTCATGTTTCTGGCACCACCTTTTCTCACTCAATCATCTACTCATGTGTGGAGGGATATCGGCTCTCCGGTTCACCCACTCGACAGTGCCTGGCCAACGGGACCTGGTCTGGAGGAGAGCCAAACTGCACCT
Seq C2 exon
TGATCAGCTGTGGGGATTCAGGTGTTCCAGCCAGCGGTCTGAGAACTGGCGAGGATTTCACCGTCGGCCACAACGTGTCATATTCCTGCCAGCCGGGATTCATGATGGAGAACGGGAGCTCTGCGATTCGCACCTGCACCCACAACGGCACCTGGAGCGGCTCTTTACCATCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'62-60,'62-59,64-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.133 C2=0.016
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8),PF0279317=HRM=PU(84.0=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGAGCAGTTTCCAGCA
R:
AGCTCCCGTTCTCCATCATGA
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]