MmuEX6053538 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47621281-47633851:-
Coord C1 exon
chr15:47633669-47633851
Coord A exon
chr15:47629236-47629412
Coord C2 exon
chr15:47621281-47621460
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTCACTTTTTGTTTCATAGCTG
3' ss Score
8.36
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGATACTACTGGTACATGTGGGGATCCAGGTACACCTGGTCATGGCTCCAGACAGGAAAGTGATTTCAGAACTAAAAGCACTGTACGTTTTGCCTGTGATACTGGATACATTCTTTATGGCTCAGAAGAAAGAACATGTTTATCCAATGGCAGTTGGACTGGAAGACAGCCAGAGTGCAAAG
Seq A exon
CTGTGCAATGTGGTAATCCAGGAACAACAGCCAATGGGAAAGTCTTTCGAATTGATGGTACAACATTTTCCAGTTCTGTCATCTATTCTTGCCTGGAAGGCTATATCCTTTCAGGACCCTCTGTTAGACAGTGCACTGCCAACGGAACATGGTCTGGAAGTCTGCCCAACTGTACAA
Seq C2 exon
TCATCAGTTGTGGAGACCCAGGTATACCAGCCAATGGATTGAGATATGGAGATGATTTTGTGGTTGGGCAAAATGTTTCTTACATGTGCCAGCCAGGCTATACCATAGAGTTAAATGGATCCAGAGTTAGAACATGTACAACTAATGGCACATGGAGTGGAGTCATGCCAACATGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'113-79,'113-77,115-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACACCTGGTCATGGCTCCAG
R:
CCTGGCTGGCACATGTAAGAA
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types