GgaEX6025150 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5152804-5157834:+
Coord C1 exon
chr23:5152804-5152986
Coord A exon
chr23:5157173-5157349
Coord C2 exon
chr23:5157655-5157834
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTTTTGCTTTCCAGTTA
3' ss Score
9.76
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGGCAGCCAGGGTGTGTGTGGCGACCCAGGGATCCCATCGCACGGCATCGGGCTGGGAGATGAGTTTGGTGTGGACAGCGTGGTGAGGTTCAGCTGTGAGCCCGGCTACACACTGCGGGGCTCATCCGAGAGGACGTGCCAGGCCAACGGCTCCTGGAGCGGCGTGCAGCCCGAGTGTGAAG
Seq A exon
TTATCTCCTGTGGGAACCCAGGCACCCCCAGCAACGCCAGGGTTCTGTTTAATGACGGCTTGGTTTTCTCCAGCTCCATCATATACCAGTGCCGAGAGGGCTATTACTCCACTGGTGTGCTGAGCAGGCACTGCACGGTGAATGGGACGTGGACCGGCAGCAGCCCAGAGTGCACAG
Seq C2 exon
TGATCAACTGCGGTGACCCAGGTGTGCCAGCCAACGGCATTAGGCTGGGCAGTGATTTTACCTACAACAAAACAGTGGTGTTCCAGTGCATGCCTGGGTACATGATGGAGTCAGACAGAGCATCCTCTCTGATGTGTACAAAAGACCGAACCTGGAATGGGACCAAACCTGCCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'67-69,'67-68,68-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGAGATGAGTTTGGTG
R:
ACTCCATCATGTACCCAGGCA
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]