DreEX0024537 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36555640-36565953:-
Coord C1 exon
chr19:36565771-36565953
Coord A exon
chr19:36558884-36559060
Coord C2 exon
chr19:36555640-36555819
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGATGTTGTTTTATTCACAGTGG
3' ss Score
6.65
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GGGATTCTGCTGGTCTGTGTGGAGATCCAGGCATTCCAGTACATGGGATCCGTCTGGGAGAAGAGTTCACCACAGGGAGTGTTGTCCGATTCAGCTGCGAGCCTGGATACCAGCTGAAGGGCTCCTCCGAGCGGACCTGTCTGGCTAACGGGAGCTGGGTGGGCATCCAGCCTGAATGCCACG
Seq A exon
TGGTCTCATGTGGCAACCCTGGCACTCCCCGAAATGCCATGATTCAGTTTCATGACGGACTGGTGTTTTCCCGCTCCATCACCTACTCCTGCAGAGAGGGTTATTACTCTACTGGTCTGCTCACCCGCCACTGTACTGTCAACGGCACCTGGACCGGAGACATGCCCGAATGCACAG
Seq C2 exon
TCATTAACTGTGGTGATCCTGGAGTGCCGGCTAATGGGATCAGACTGGGCAGTGACTTCACGTACAGCCACAGTGTGAGCTTCCAGTGTTCACCGGGATTCACTATGGATGCTGATCGGGCTTCCACACTCATCTGCACCAAGGACCGAACGTGGAATGGCACAAAGCCAGTTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'66-67,'66-66,68-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTGCTGGTCTGTGTGG
R:
TGAAGTCACTGCCCAGTCTGA
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]