RnoEX6023408 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146714701-146721692:+
Coord C1 exon
chr5:146714701-146714883
Coord A exon
chr5:146720253-146720429
Coord C2 exon
chr5:146721513-146721692
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCACTCTTCTGCTTTCCCAGTGA
3' ss Score
6.69
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAACCAGTACAGGAGTTTGTGGTGACCCAGGGATCCCAGCCCACGGCATCCGGCTAGGGGACAGCTTTGCCCCAGGCAGTCTGATACGCTTTAGTTGTGAAGCTGGCCACATGCTCCGGGGATCTTCAGAGCGAGTATGTCAAGCCAATGGCTCCTGGAGTGGGTCACAGCCCGAGTGTGGAG
Seq A exon
TGATCTCATGTGGCAACCCCGGAACTCCAAGCAATGCCCGAGTGGTGTTCAGCGACGGCCTGGTGTTCTCCAGCTCCATTGTCTATGAGTGTCGTGAAGGCTACTACTCCACAGGCCTGCTCAGCCGACACTGCTCTGTCAATGGCACCTGGACAGGCAGTGACCCTGAGTGCACAG
Seq C2 exon
TCATAAACTGTGGTGACCCCGGGATTCCAGCCAATGGCATCCGGCTGGGCAATGACTTCAGGTACAACAAAACTGTGACATACCAGTGTGTCCCCGGCTACGTGATGGAATCACGCAGAGTGTCTGTGCTGGGCTGCACCAAGGACCGGACCTGGAACGGTACCAAGCCGGTTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'69-79,'69-78,70-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTCCGGGGATCTTCAGA
R:
GCTTGGTACCGTTCCAGGTC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]