GgaEX6025150 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4782302-4787332:+
Coord C1 exon
chr23:4782302-4782484
Coord A exon
chr23:4786671-4786847
Coord C2 exon
chr23:4787153-4787332
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTTTTGCTTTCCAGTTA
3' ss Score
9.76
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGGCAGCCAGGGTGTGTGTGGCGACCCAGGGATCCCATCGCACGGCATCGGGCTGGGAGATGAGTTTGGTGTGGACAGCGTGGTGAGGTTCAGCTGTGAGCCCGGCTACACACTGCGGGGCTCATCCGAGAGGACGTGCCAGGCCAACGGCTCCTGGAGCGGCGTGCAGCCCGAGTGTGAAG
Seq A exon
TTATCTCCTGTGGGAACCCAGGCACCCCCAGCAACGCCAGGGTTCTGTTTAATGACGGCTTGGTTTTCTCCAGCTCCATCATATACCAGTGCCGAGAGGGCTATTACTCCACTGGTGTGCTGAGCAGGCACTGCACGGTGAATGGGACGTGGACCGGCAGCAGCCCAGAGTGCACAG
Seq C2 exon
TGATCAACTGCGGTGACCCAGGTGTGCCAGCCAACGGCATTAGGCTGGGCAGTGATTTTACCTACAACAAAACAGTGGTGTTCCAGTGCATGCCTGGGTACATGATGGAGTCAGACAGAGCATCCTCTCTGATGTGTACAAAAGACCGAACCTGGAATGGGACCAAACCTGCCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'71-72,'71-70,72-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGAGATGAGTTTGGTG
R:
ACTCCATCATGTACCCAGGCA
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]