MmuEX6096187 @ mm9
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128216253-128223395:+
Coord C1 exon
chr4:128216253-128216435
Coord A exon
chr4:128221914-128222090
Coord C2 exon
chr4:128223216-128223395
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACACTCTTCTGCCTTTCCAGTGA
3' ss Score
8.78
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAACCAGCACAGGAGTTTGTGGTGACCCAGGGATCCCAGCCCATGGCATCCGCCTAGGAGACAGCTTTGCCCCAGGCAGTGTAATGCGCTTTAGTTGTGACGCTGGCCACGTGCTCCGGGGATCTTCCGAGCGAATGTGTCAAGCCAATGGCTCCTGGAGCGGGTCGCAGCCTGAGTGTGGAG
Seq A exon
TGATCTCATGTGGGAACCCCGGAACTCCAAGCAATGCCCGAGTGGTGTTCAGCGATGGCCTGGTGTTCTCCAGTTCCGTTGTCTATGAGTGTCGTGAAGGCTACTATGCCACGGGCCTGCTCAGCCGACACTGCTCTGTCAATGGCACCTGGACAGGCAGTGACCCTGAGTGCACAG
Seq C2 exon
TTATAAACTGTGGTGACCCTGGGATTCCAGCCAATGGCATCCGGCTGGGCAATGACTTCAGGTACAACAAGACTGTGACATACCAGTGTGTCCCCGGCTATGTGATGGAATCACACAGAGTGTCTGTGCTGAGCTGCACCAAGGACCGGACCTGGAACGGTACCAAGCCGGTTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'65-63,'65-62,66-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCACAGGAGTTTGTGG
R:
TACCTGAAGTCATTGCCCAGC
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: