BtaEX6019048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112876188-112882235:+
Coord C1 exon
chr3:112876188-112876370
Coord A exon
chr3:112880494-112880670
Coord C2 exon
chr3:112882056-112882235
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTTCGGCTTCCTAGTGA
3' ss Score
7.09
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAACCAGCATAGGAGTCTGTGGTGACCCTGGCATCCCAGCCCACGGCATCCGTCTGGGGGACAGCTTTGCCCCGGGCAGCCTAATGCGCTTCAGCTGTGAAGCTGGCCACGTGCTCCGAGGGTCATCAGAGCGAACTTGTCAAGCCAACGGCTTGTGGAGCGGCGTGCAGCCTGAGTGTGGAG
Seq A exon
TGATCTCTTGCGGGAATCCTGGGACTCCAAGCAATGCCAGAGTCCTGTTCAGTGACGGCCTGGTTTTCTCCAGCTCCATCGTCTACGAGTGTCGGGAAGGCTACTATGCCACAGGCCTACTTAGCCGGCACTGCTCGGTCAATGGCACCTGGACGGGCAGTGATCCGGAGTGCACAG
Seq C2 exon
TCATAAACTGTGGCGACCCTGGGGTTCCAGCCAACGGCCTCCGGTTGGGCAGTGACTTCAGGTACAACAGAACTGTCACCTACCAGTGCGTCCCTGGCTACACGATGGAGTCGCACAGGGTGTCCGTGCTGAGCTGCACCAAGGACCGGACGTGGAATGGCACCAAGCCCGTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'75-73,'75-72,77-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCATAGGAGTCTGTGGT
R:
TGTACCTGAAGTCACTGCCCA
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]