RnoEX6056057 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78816480-78820847:+
Coord C1 exon
chr16:78816480-78816662
Coord A exon
chr16:78819953-78820129
Coord C2 exon
chr16:78820668-78820847
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTGCTTCCTGACAGCCG
3' ss Score
10.04
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
GAAATAGTCCTGGATTTTGTGGTGATCCAGGGACCCCAGCACATGGGTCTCGTCTTGGGGATGAGTTTAAGACAAAGAGTCTTTTGCGATTCTCCTGTGAGATGGGCCACCAGCTGCGGGGTTCTGCAGAGCGCACATGCCTGGTGAATGGGTCCTGGTCAGGAGTCCAGCCTGTGTGTGAGG
Seq A exon
CCGTGTCCTGTGGAAACCCTGGCACCCCTACCAATGGGATGATCCTCAGCAGCGATGGAATCCTCTTCTCCAGCTCTGTCATCTATGCCTGCTGGGAAGGCTACAAGACCTCGGGGCTCATGACGCGGCACTGCACAGCGAACGGGACATGGACAGGCACAGCCCCTGACTGTACAA
Seq C2 exon
TCATCAGCTGTGGTGATCCTGGCACACTGCCCAATGGCATCCAGTTTGGGACAGACTTCACTTTCAACAAGACCGTGAGCTATCAGTGCAACCCTGGCTACCTGATGGAGCCCCCAACATCACCCACCATCCGCTGCACCAAAGATGGTACATGGAATCAGACCCGGCCCCTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719-'52-55,'52-54,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACATGGGTCTCGTCTTG
R:
CTCCATCAGGTAGCCAGGGTT
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]