GgaEX1017826 @ galGal3
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
NA
Coordinates
chr3:92968337-92974767:+
Coord C1 exon
chr3:92968337-92968519
Coord A exon
chr3:92972886-92973062
Coord C2 exon
chr3:92974585-92974767
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTAAACTTTTTTTCACAGCTG
3' ss Score
8.82
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GAAATAATCCTGGCTACTGTGATGATCCAGGAATACCAGCCCATGGGTCTAGATTAGGAGATGAGTTCAAAATAAAAAGTTTGCTTCGTTTCTCCTGTGAAATGGGTTATCAACTGAGAGGATCTTCAGAACGAACATGCCTGCTTAATGGGTCTTGGTCAGGTATACAGCCTGTGTGTGAAG
Seq A exon
CTGTATCTTGTGGAAACCCTGGCACTCCAGCCAATGGTATGATAATATACAGTGATGGAATATTATTCTCCAGCTCGGTTATTTATGCTTGCTGGGAAGGTTACAAAACTTCAGGGCTAACTACTCGACATTGTACTGCCAATGGGACATGGACTGGCACTGCTCCAGACTGCACAG
Seq C2 exon
TAGTGATCAGCTGTGGAGATCCAGGTGCATTAGCAAATGGCATTCAGTTTGGAAATGATTTCACCTTTAATAAGACAGTCAGCTATCAGTGCAATCCAGGATATGTGATGGAGCCTGCCAGTTCATCTACCATGCGTTGTATAAAAGACAGCACTTGGAACCAGAGTAAACCAATTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'53-55,'53-54,54-55=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCAGGAATACCAGCCCA
R:
TGCACTGATAGCTGACTGTCT
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]