MmuEX6034709 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:15921034-15925467:-
Coord C1 exon
chr8:15925285-15925467
Coord A exon
chr8:15921729-15921905
Coord C2 exon
chr8:15921034-15921213
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTGCTTCCTGACAGCCG
3' ss Score
10.04
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
GAAATAGTCCTGGATTTTGTGGTGATCCAGGGACCCCAGCACATGGGTCTCGTCTTGGGGATGAGTTTAAGACAAAGAGTCTTTTGCGCTTCTCCTGTGAGATGGGCCACCAGCTGCGGGGCTCTGCAGAACGCACATGCCTGGTAAATGGATCCTGGTCAGGAGTACAGCCTGTGTGTGAGG
Seq A exon
CCGTGTCCTGCGGAAACCCAGGCACGCCGACCAACGGGATGATCCTCAGCAGTGATGGGATCCTCTTCTCCAGCTCTGTCATCTATGCCTGCTGGGAAGGCTACAAGACGTCGGGGCTCATGACTCGGCACTGCACGGCCAATGGGACGTGGACAGGCACAGCTCCTGACTGCACAA
Seq C2 exon
TCATCAGCTGTGGGGATCCTGGCACACTGCCCAATGGCATCCAGTTTGGGACAGACTTCACTTTCAACAAGACCGTGAGCTATCAGTGCAACCCCGGCTACCTAATGGAGCCCCCAACATCACCCACCATCCGCTGCACCAAAGATGGCACATGGAATCAGAGCCGGCCCCTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACATGGGTCTCGTCTTG
R:
GGGGTTGCACTGATAGCTCAC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types