BtaEX6106357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1050515-1056403:-
Coord C1 exon
chr27:1056221-1056403
Coord A exon
chr27:1051325-1051501
Coord C2 exon
chr27:1050515-1050694
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCTGTCTCCCCACAGCTG
3' ss Score
12.85
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAAATAACCCTGGATTTTGCGGTGATCCGGGGACCCCAGCCCATGGGTCGCGGCTTGGAGAGGAGTTTAAGGCCAAGAGCCTCCTGCGCTTCTCCTGTGAAATGGGCTACCAGCTGCGGGGCTCAGCCGAGCGGACGTGTCTGCTCAATGGGTCCTGGTCAGGACTGCAGCCCGTGTGCGAGG
Seq A exon
CTGTGTCCTGTGGGAACCCGGGGACGCCCACCCACGGCAAGATCGTCAGCAGCGATGGCGTGCTGTTCTCCAGCTCGGTGGTCTACGCCTGCTGGGACGGCTACAGGACCTCGGGGCTGACCACTCGCCACTGCACCGCCAACGGGACCTGGACCGGCACGGCCCCCGACTGCACGC
Seq C2 exon
TCATCAGCTGTGGAGACCCAGGGACCCTGGCTAACGGCATCCAGTTCGGGACGGATTTCACCTTCAACAAGACGGTCAGCTACCAGTGCAACCCCGGCTACACCATGGAGCCCGCCACGTCCCCCACCATCCGCTGCACCAAGGACAGTACCTGGAATCACAGCAAACCGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'57-57,'57-56,58-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGATTTTGCGGTGATC
R:
TTGAAGGTGAAATCCGTCCCG
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]