DreEX6074435 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44601450-44615322:-
Coord C1 exon
chr19:44615140-44615322
Coord A exon
chr19:44605632-44605808
Coord C2 exon
chr19:44601450-44601629
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTAAAACTCTACAGCGG
3' ss Score
6.97
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
GTGATTCTTCTGGGACGTGTGGTGACCCGGGCACACCGTCCCACGGCAGCAGAGACGAGAGTGACTTTCGGATACGAAGCAAAGTGCACTTCAGCTGCTCGGTGGGATACGAGCTTTTCGGCTCCGTGGAAAGGATGTGTTTCCCAAACGGCACGTGGTCCGGGACGCAACCCTCCTGCAAAC
Seq A exon
CGGTGCAGTGTGGAAACCCTGGGACTCCCAGTAATGGACGGGTGTATCGACTGGACGGCACCACCTTTTCACACTCTGTCATCTACTCATGCATGGATGGATACCTGCTGAGCGGCTCGACCACGCGACAGTGCCAAGCGAACGGTACCTGGTCTGGCACTGCACCAAACTGCACCT
Seq C2 exon
TGATCAACTGTGGAGAGCCAGGAGTGCCGGCCAATGGACTGAGATACGGTGAAGACTTTACCATTGCGCAAAACATCACTTTTATGTGTCAGCCCGGCTACACCATGGAGGCCGAGAGCTTCTCCACCATCACATGTACTGGAAATGGTACCTGGAACGCCCCTGTGCCTTTCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'58-56,'58-55,59-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.1)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGTGGAAAGGATGTGTT
R:
TTTACAGAAAGGCACAGGGGC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]