BtaEX6064929 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47131776-47138873:+
Coord C1 exon
chr13:47131776-47131885
Coord A exon
chr13:47133130-47133210
Coord C2 exon
chr13:47138750-47138873
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACAGCTGTGCTCTGTTTCAGTTC
3' ss Score
9.07
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
AGATCGGCCCTGCCTCTGTGATGGTGGGGAACCTGGTGTCTGGGAAGAGGATCGCACAGGCCAGTGGCAGAGACTTGGGCCAGATAGAAGACAATGACCAGGCCCGGAAG
Seq A exon
TTCCTGTTCCTCTCGGAGGTCCTGCAGTGGAGGGCGCAGACCACCCCTGACCACGTGCTGTACACGCTGCTCAACTGTAGG
Seq C2 exon
GGCACAATAGCAAACTCGCTGACGTGTGTCCAGCTGCACAAGCGGGCTGAGAAGATAGCCGTGATGCTGATGGAGAGGGGACACCTGCAGGACGGGGACCACGTCGCCCTGGTCTACCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'30-31,'30-29,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGGTGTCTGGGAAGA
R:
CAGGTGTCCCCTCTCCATCAG
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]