GgaEX0009494 @ galGal4
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9953125-9957804:-
Coord C1 exon
chr2:9957695-9957804
Coord A exon
chr2:9956831-9956911
Coord C2 exon
chr2:9953125-9953248
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTACTCTTCTTTCTTTTAGTTT
3' ss Score
9.01
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAATTGGCCCTGCCTCTGTGATGGTGGGGAACTTGGTCTCTGGAAAAAGAATTGCCCAGGCCAGTGGTAGAGATCTGGGGCAAATAGAAGATAATGATCAAGCCAGAAAG
Seq A exon
TTTCTCTTCCTCTCAGAAGTTTTACAGTGGAGAGCTCAGACAACTCCTGACCATGTGCTTTACACTCTACTTAACTGCAGG
Seq C2 exon
GGAACAATAGCCAACTCATTAACATGTGTCCAGCTACATAAGCGAGCAGAGAAGATAGCCGTCATGCTGATGGAAAGGGGGCATTTGCAAGATGGAGACCATGTGGCTTTGGTTTACCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'25-26,'25-25,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(16.7=70.4)
C2:
PF0050123=AMP-binding=FE(36.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGTGGGGAACTTGGTCT
R:
CCCCCTTTCCATCAGCATGAC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]