HsaEX6087278 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:344999-357937:-
Coord C1 exon
chr10:357828-357937
Coord A exon
chr10:356426-356506
Coord C2 exon
chr10:344999-345110
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATGCCCGTGCTCTGTTCCAGTTC
3' ss Score
8.48
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
AAATCGGCCCTGCCTCTGTGATGGTGGGGAACCTGGTCTCTGGGAAGAGAATCGCCCAGGCCAGTGGCAGAGACCTGGGTCAGATCGAAGATAACGACCAGGCACGCAAG
Seq A exon
TTCCTGTTCCTCTCAGAGGTCTTGCAGTGGAGAGCACAGACCACCCCGGACCACATCCTCTACACGCTGCTCAACTGTCGG
Seq C2 exon
GTGAGTCGCTCTGCCTGTCTGATGACGACACAGCTGATCTGTAAGTTGCTGCGGTCCAGGGAGGCGGCGGCGGCTGTGGACGTCAGGACGTGGCCCCTCATCCTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX3-10/12=9-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGGAAGAGAATCGCCC
R:
GTCCAGGATGAGGGGCCAC
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains