DreEX6095463 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27106645-27114057:+
Coord C1 exon
chr24:27106645-27106754
Coord A exon
chr24:27112198-27112278
Coord C2 exon
chr24:27113934-27114057
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGGCGTTTTTCTACCCATAGTTC
3' ss Score
6.93
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
AGATCGGACCCGCCTCTGTGATGGTGGGTAATTTGGTCTCGGGGAAGAGGATCGCTCAGGCAAGCGGCAGAGATCTGGGCCAGATCGAAGACAATGATCAGGCAAGAAAG
Seq A exon
TTCCTCTTTCTGTCTGAGGTGCTGCAGTGGAGAGCCCAAACCACACCAGATCATGTTCTCTTCACCCTCCTCAGCTCAAGG
Seq C2 exon
GGTGCAGTCTTGAGCTCACTGACATGTCTTCAGTTGCATAAGCGTGCAGAAAAGATTGCCACCATGTTGATGGAGCGAGGACACCTGCAGGACGGGGATCACGTTGCACTGGTTTACCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'28-32,'28-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(3.9=70.4)
C2:
PF0050123=AMP-binding=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGATCGCTCAGGCAAG
R:
AAACCAGTGCAACGTGATCCC
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]