HsaEX6087278 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:395271-403877:-
Coord C1 exon
chr10:403768-403877
Coord A exon
chr10:402366-402446
Coord C2 exon
chr10:395271-395394
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATGCCCGTGCTCTGTTCCAGTTC
3' ss Score
8.48
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
AAATCGGCCCTGCCTCTGTGATGGTGGGGAACCTGGTCTCTGGGAAGAGAATCGCCCAGGCCAGTGGCAGAGACCTGGGTCAGATCGAAGATAACGACCAGGCACGCAAG
Seq A exon
TTCCTGTTCCTCTCAGAGGTCTTGCAGTGGAGAGCACAGACCACCCCGGACCACATCCTCTACACGCTGCTCAACTGTCGG
Seq C2 exon
GGTGCGATAGCGAACTCGCTGACCTGCGTGCAGCTGCACAAGAGAGCTGAGAAGATCGCCGTGATGCTGATGGAGAGGGGCCACCTTCAGGACGGCGACCACGTGGCCTTGGTCTACCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGTGATGGTGGGGAA
R:
ATCAGCATCACGGCGATCTTC
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)