RnoEX0027971 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63754778-63762242:+
Coord C1 exon
chr17:63754778-63754887
Coord A exon
chr17:63756167-63756247
Coord C2 exon
chr17:63762119-63762242
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATATCCTTGTTTCATTCCAGTTC
3' ss Score
8.69
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
Exon sequences
Seq C1 exon
AAATTGGCCCTGCCTCAGTGATGGTGGGAAACCTAGTGTCTGGGAAGAGGATTGCCCAGGCTAGTGGCAGAGACCTGGGTCAGATAGAAGACAATGACCAGGCCCGGAAG
Seq A exon
TTCCTATTCCTCTCAGAGGTCTTACAGTGGAGAGCGCAGACCACTCCAGACCACCTGCTGTACACTCTGCTCAATTGTCGG
Seq C2 exon
GGAACAATCGCAAATTCCTTGACGTGTGTTCAACTCCACAAGCGTGCAGAAAAGATAGCAGTGATGCTGATGGAGAGGGGCCACCTGCAGGACGGAGACCACGTGGCATTAGTCTACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'42-39,'42-38,44-39
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGATTGCCCAGGCTAGT
R:
GACTAATGCCACGTGGTCTCC
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]