MmuEX6057102 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9613593-9621248:+
Coord C1 exon
chr13:9613593-9613702
Coord A exon
chr13:9614991-9615071
Coord C2 exon
chr13:9621125-9621248
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATATCCTTGTATCATTCCAGTTC
3' ss Score
7.53
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
Exon sequences
Seq C1 exon
AAATTGGCCCTGCCTCAGTGATGGTGGGAAATCTAGTATCTGGGAAGAGGATTGCCCAGGCTAGCGGCAGAGACCTGGGTCAGATAGAGGACAATGACCAGGCCCGGAAG
Seq A exon
TTCCTGTTCCTCTCAGAGGTCTTACAGTGGAGAGCACAGACCACTCCTGACCATCTGCTGTACACTCTGCTCAACTGTCGG
Seq C2 exon
GGAACAATAGCAAATTCCTTGACATGTGTTCAACTACACAAGCGTGCAGAAAAGATAGCAGTGATGCTGATGGAGAGGGGCCACCTGCAGGACGGAGACCATGTGGCATTAGTCTACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'27-33,'27-32,29-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAGTGATGGTGGGAAAT
R:
CCTCTCCATCAGCATCACTGC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: