BtaEX6064944 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47085798-47095693:+
Coord C1 exon
chr13:47085798-47085917
Coord A exon
chr13:47087332-47087529
Coord C2 exon
chr13:47095602-47095693
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCAAATGTATTTAGTTC
3' ss Score
5.06
5' ss Seq
ACGGTAATC
5' ss Score
4.8
Exon sequences
Seq C1 exon
GTGTGCCTGTAAGTAGCCGCGTATCTGCAAAGATCCAGCAGCTTGTCAATACCCTCAAACGACCCAAACGACCACCCTTACGGGAATTCTTCGTCGATGACTTTGAAGAACTACTAGAAG
Seq A exon
TTCAACAACCAGATCCAAACCAGCCAAAGCCAGAGGGAGCCCAGATGTTGGCGATGCGTGGGGAGCAGCTGGGTGTGGTTACAAATTGGCCCCCATCTTTAGAAGCAGCGTTACAGCGATGGGGGACCATCTCACCAAAGGCCCCGTGCTTGACCACGATGGACACGAACGGAAAACCTCTCTACATCCTTACTTACG
Seq C2 exon
GCAAACTGTGGACAAGAAGTATGAAGGTTGCTTACAACATTCTGCATAAATTAGGTACAAAACAAGAGCCTATGGTGCGACCTGGAGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=0.313 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(6.1=43.3)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCTGTAAGTAGCCGC
R:
CCTATCTCCAGGTCGCACCAT
Band lengths:
212-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]