RnoEX0027962 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63692923-63701003:+
Coord C1 exon
chr17:63692923-63693042
Coord A exon
chr17:63694406-63694603
Coord C2 exon
chr17:63700912-63701003
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTATGTTTAAATGTATTTAGTTC
3' ss Score
3.81
5' ss Seq
ACGGTAATC
5' ss Score
4.8
Exon sequences
Seq C1 exon
GTGTACCAGTAAGTAGCCGGGTATCAGCAAAAATTCAGCAGCTTGTCAATACCCTTAAACGACCGAAGAGACCACCATTACGGGAATTCTTTGTTGATGACTTTGAGGAATTGTTAGAAG
Seq A exon
TTCAACAACCAGATCCAAACCAACCAAAGCCAGAGGGCGCCCAGATGCTGGCCACAAGAGGGGAGCAGTTGGGAGTCGTCACAAACTGGCCACCCTCTTTAGAAGCTGCACTACAACGATGGGGGACCATCTCTCCGAAGGCTCCCTGCCTGACTACCATGGACACAAATGGCAAACCCCTGTACATCCTCACTTACG
Seq C2 exon
GCAAACTATGGACAAGAAGTATGAAGGTTGCTTACAACATTCTACATAAATTAGGTACAAAGCAAGAACCTATGGTACGGCCTGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'15-16,'15-14,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.343 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(6.1=43.3)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCAGTAAGTAGCCGGGT
R:
CTGTCTCCAGGCCGTACCATA
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]