DreEX0027035 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27072459-27078151:+
Coord C1 exon
chr24:27072459-27072569
Coord A exon
chr24:27074067-27074264
Coord C2 exon
chr24:27078060-27078151
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATATGTTTTTGCTCACTCAGTCC
3' ss Score
5.8
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
TTAGCAGTCGTGTTTCTGCTAAAATCCAGCAACTTGTAAACACATTAAAGCAGCCCAGACGACCTCCGCTTCGAGAGTTTTTTGTTGATGATTTTGAAGAGCTCCTAGAAG
Seq A exon
TCCAGCAACCTGACCCAAACCAGCCGCGGCCAGAGGGGGCTCAGATGGTCCCGATTCGAGGAGAGCCGCTGGGGGTCGTCACTAATTGGCCACCATCTCTTGAAGCTGCTCTTCAACGCTGGGGGACGATTTCACCCAAAGCCCCCTGTCTGACCACGATGGACACCAACGGCAAACCCCTCTACGTCCTTACTTACG
Seq C2 exon
GTAAACTTTGGTCTCGGAGCATTAAAGTAGCATACAACATCCTGCACAAACTGGGCACCAAGCAGGAACCCATGGTCCGACCGGGAGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'8-12,'8-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.313 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(6.1=43.3)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGTTTCTGCTAAAATCCAGC
R:
GATCTCCCGGTCGGACCATG
Band lengths:
195-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]