HsaEX6087263 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:454866-461828:-
Coord C1 exon
chr10:461709-461828
Coord A exon
chr10:459853-460050
Coord C2 exon
chr10:454866-454957
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTTGTATTCAAACGATTTAGTTC
3' ss Score
3.39
5' ss Seq
ACGGTAATC
5' ss Score
4.8
Exon sequences
Seq C1 exon
GAGTACCAGTAAGTAGCCGGGTGTCAGCAAAAATCCAGCAGCTTGTCAATACCCTCAAACGACCGAAACGACCACCTTTACGAGAATTCTTTGTCGATGACTTTGAAGAATTATTAGAAG
Seq A exon
TTCAACAACCGGATCCGAACCAACCAAAGCCGGAGGGGGCCCAGATGCTGGCCATGCGCGGAGAGCAGCTGGGCGTGGTCACGAACTGGCCGCCGTCGCTGGAGGCCGCACTGCAGAGGTGGGGCACCATCTCGCCCAAGGCGCCCTGCCTGACCACCATGGACACCAACGGGAAGCCCCTCTACATCCTCACTTACG
Seq C2 exon
GCAAGCTGTGGACAAGAAGTATGAAGGTCGCTTACAGCATTCTACACAAATTAGGCACAAAGCAGGAACCCATGGTCCGGCCTGGAGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=0.313 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(6.1=43.3)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCAGTAAGTAGCCGGGT
R:
CTATCTCCAGGCCGGACCATG
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)