GgaEX0009501 @ galGal4
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9987797-9998141:-
Coord C1 exon
chr2:9998022-9998141
Coord A exon
chr2:9996902-9997099
Coord C2 exon
chr2:9987797-9987888
Length
198 bp
Sequences
Splice sites
3' ss Seq
TATCTTTTCATAATCATAAGTTC
3' ss Score
1.95
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GAGTACCAGTGAGCAGCAGAGTGTCAGCAAAGATTCAGCAGCTGGTCAATACACTAAAACGGCCCAAACGACCACCATTACGAGAGTTCTTTGTAGATGACTTTGAGGAATTGTTAGAAG
Seq A exon
TTCAACAGCCAGATCCAAACCAGCCAAAGCCAGAAGGAGCTCAGATGTTGGCTATGCGTGGGGAACAATTAGGTGTGGTTACAAATTGGCCACCTTCTCTGGAAGCAGCTTTGCAGCGATGGGGGACCATCTCACCGAAAGCTCCTTGCCTAACCACTATGGATACCAATGGAAAACCACTGTATATTCTCACGTACG
Seq C2 exon
GCAAACTTTGGACCAGAAGTATGAAGGTTGCTTACAATATACTACATAAATTAGGCACAAAACAAGAACCAATGGTACGACCTGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'4-7,'4-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.313 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(12.3=43.3)
C2:
PF0050123=AMP-binding=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCAGTGAGCAGCAGAGT
R:
CTGTCTCCAGGTCGTACCATTG
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]