MmuEX6057113 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9550992-9560008:+
Coord C1 exon
chr13:9550992-9551111
Coord A exon
chr13:9552520-9552717
Coord C2 exon
chr13:9559917-9560008
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTATGTTTAAATGTATTTAGTTC
3' ss Score
3.81
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GTGTACCAGTAAGTAGCCGGGTATCAGCAAAAATTCAGCAGCTTGTCAATACCCTTAAACGACCGAAGCGGCCACCATTACGGGAATTCTTTGTTGATGACTTTGAAGAATTGTTAGAAG
Seq A exon
TTCAACAACCAGATCCAAACCAACCAAAGCCAGAGGGCGCCCAGATGCTGGCCACAAGAGGGGAGCAGTTGGGAGTCGTCACAAACTGGCCACCCTCTTTAGAAGCTGCACTACAACGATGGGGGACCATCTCCCCGAAGGCCCCCTGCCTGACCACCATGGACACAAATGGAAAGCCCCTGTACATCCTCACTTATG
Seq C2 exon
GCAAACTATGGACACGAAGTATGAAGGTTGCTTACAACATTCTACATAAACTAGGTACAAAGCAAGAACCTATGGTACGGCCTGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.343 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(11.2=43.3)
C2:
PF0050123=AMP-binding=PU(1.4=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCAGTAAGTAGCCGGGT
R:
CTGTCTCCAGGCCGTACCATA
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: