MmuEX6057113 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9551746-9560762:+
Coord C1 exon
chr13:9551746-9551865
Coord A exon
chr13:9553274-9553471
Coord C2 exon
chr13:9560671-9560762
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTATGTTTAAATGTATTTAGTTC
3' ss Score
3.81
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GTGTACCAGTAAGTAGCCGGGTATCAGCAAAAATTCAGCAGCTTGTCAATACCCTTAAACGACCGAAGCGGCCACCATTACGGGAATTCTTTGTTGATGACTTTGAAGAATTGTTAGAAG
Seq A exon
TTCAACAACCAGATCCAAACCAACCAAAGCCAGAGGGCGCCCAGATGCTGGCCACAAGAGGGGAGCAGTTGGGAGTCGTCACAAACTGGCCACCCTCTTTAGAAGCTGCACTACAACGATGGGGGACCATCTCCCCGAAGGCCCCCTGCCTGACCACCATGGACACAAATGGAAAGCCCCTGTACATCCTCACTTATG
Seq C2 exon
GCAAACTATGGACACGAAGTATGAAGGTTGCTTACAACATTCTACATAAACTAGGTACAAAGCAAGAACCTATGGTACGGCCTGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'19-14,'19-12,20-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.343 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(16.3=43.3)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCAGTAAGTAGCCGGGT
R:
CTGTCTCCAGGCCGTACCATA
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types