GgaEX0009501 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9947897-9958241:-
Coord C1 exon
chr2:9958122-9958241
Coord A exon
chr2:9957002-9957199
Coord C2 exon
chr2:9947897-9947988
Length
198 bp
Sequences
Splice sites
3' ss Seq
TATCTTTTCATAATCATAAGTTC
3' ss Score
1.95
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GAGTACCAGTGAGCAGCAGAGTGTCAGCAAAGATTCAGCAGCTGGTCAATACACTAAAACGGCCCAAACGACCACCATTACGAGAGTTCTTTGTAGATGACTTTGAGGAATTGTTAGAAG
Seq A exon
TTCAACAGCCAGATCCAAACCAGCCAAAGCCAGAAGGAGCTCAGATGTTGGCTATGCGTGGGGAACAATTAGGTGTGGTTACAAATTGGCCACCTTCTCTGGAAGCAGCTTTGCAGCGATGGGGGACCATCTCACCGAAAGCTCCTTGCCTAACCACTATGGATACCAATGGAAAACCACTGTATATTCTCACGTACG
Seq C2 exon
GCAAACTTTGGACCAGAAGTATGAAGGTTGCTTACAATATACTACATAAATTAGGCACAAAACAAGAACCAATGGTACGACCTGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.313 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(6.1=43.3)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCAGTGAGCAGCAGAGT
R:
CTGTCTCCAGGTCGTACCATTG
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]