BtaEX6067650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6620170-6631720:+
Coord C1 exon
chr16:6620170-6620253
Coord A exon
chr16:6621243-6621371
Coord C2 exon
chr16:6631700-6631720
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCAATTATATTTATTACAGATG
3' ss Score
7.39
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
Exon sequences
Seq C1 exon
TCATTTGTGAAGGACTATATGATTTCTATCACCAGACTTCTGTTGGGATTGGACACTACACCAGGATCGGGATTTCTTTGCTCT
Seq A exon
ATGAAGATCACAGAGGATGACCTATGGATTAGGACTTATGCCAGACTTTATCAGAAGTTATGTTCCTCTACTGGAGATGTTCCCATTGGTATTTACAGGACGGAATCTCAAAAGCTTACTACATCTGAG
Seq C2 exon
AAACATGTAATGAAAAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'31-34,'31-32,32-34=AN
Average complexity
A_C3
Mappability confidence:
78%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]