GgaEX1031360 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2783139-2786716:+
Coord C1 exon
chr8:2783139-2783222
Coord A exon
chr8:2784678-2784806
Coord C2 exon
chr8:2786416-2786716
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTATTATTATTTGTTCAGATG
3' ss Score
6.66
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TCATTTGTGAAAGATTATATGATCTCTATCACAAGACTTCTTCTGGGACTTGATACAACACCAGGATCTGGGTTTCTTTGTTCA
Seq A exon
ATGAAAATCACAGAAGAGGATTTATGGATTAGAACATATGCCAGACTATATCAGAAACTTTGTTCTTCTACAGGAGACATTCCAATTGGAGTCTACAGGACAGAATCCCAAAAGCTTACAACGTCCGAA
Seq C2 exon
TCTCAAATCTCTATCAGTGTAGAAGAATGGGAAGACACTAAAGACACCAGAGAACAGGTTAATTATCGTAGTAATCATCGTAACTCAACATCTAGCGATCAGTCCGACCATCCTTTGTTACGACGAAAAAGCATGCAGTGGGCTCGACGGCTGAGCCGAAGAGTACCGAGACACTCTGGCAAAACAGCTGAAAGGATAAGCCAGCAGCGAATGAACCTTTACAGGAGGTCAGAAAGACAGGAACTTGCTGAACTTGTGAAAAACAGAATGAAACATCTCGGCCTTTCTCCAGCAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451_MULTIEX2-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTTGATACAACACCAGG
R:
CGCTGCTGGCTTATCCTTTCA
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]