GgaEX1031360 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2810863-2813125:+
Coord C1 exon
chr8:2810863-2810946
Coord A exon
chr8:2812402-2812530
Coord C2 exon
chr8:2813056-2813125
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTATTATTATTTGTTCAGATG
3' ss Score
6.66
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TCATTTGTGAAAGATTATATGATCTCTATCACAAGACTTCTTCTGGGACTTGATACAACACCAGGATCTGGGTTTCTTTGTTCA
Seq A exon
ATGAAAATCACAGAAGAGGATTTATGGATTAGAACATATGCCAGACTATATCAGAAACTTTGTTCTTCTACAGGAGACATTCCAATTGGAGTCTACAGGACAGAATCCCAAAAGCTTACAACGTCCGAA
Seq C2 exon
GCTTTAAAAACAAACAAAAAAAAGGGACAAGAAAACCACAATAAACTGCCAATACTCAACACACCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'41-46,'41-44,43-46=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF149431=MRP-S26=FE(41.6=100)
C2:
PF149431=MRP-S26=FE(22.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTATCACAAGACTTCTTCTGGG
R:
TTGGTGTGTTGAGTATTGGCAGT
Band lengths:
130-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]