RnoEX6044505 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57469391-57500051:+
Coord C1 exon
chr13:57469391-57469474
Coord A exon
chr13:57470509-57470637
Coord C2 exon
chr13:57499751-57500051
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCATTCATATGCATTATAGATG
3' ss Score
5.78
5' ss Seq
GAGGTTTGA
5' ss Score
3.11
Exon sequences
Seq C1 exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
Seq A exon
ATGAAAATTACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCTACAGAACAGAATCTCAGAAGCTAACTACATCTGAG
Seq C2 exon
TCTCAAATATCCATCAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCATTCACCGCAACTCAACCTCTAGCGACCAGTCAGACCACCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGGAGGCTGAGCAGAAAAGGGCCAAAGCACTCTGGTAAAACTGCAGAAAAGATAACCCAGCAACGACTGAATCTCTACAGGAGGTCGGAAAGACAGGAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCTACGGTGGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'38-46,'38-42,39-46=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.626
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATACCAGGATCGGGGTTT
R:
GAGATTCAGTCGTTGCTGGGT
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]