MmuEX6027919 @ mm9
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142470172-142480896:+
Coord C1 exon
chr1:142470172-142470255
Coord A exon
chr1:142471306-142471434
Coord C2 exon
chr1:142480596-142480896
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCATTCATATGCATTATAGATG
3' ss Score
5.78
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
Exon sequences
Seq C1 exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
Seq A exon
ATGAAAATCACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATCGGGATCTACAGAACAGAATCTCAGAAACTAACGACATCTGAG
Seq C2 exon
TCTCAAATATCCATTAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCCTTCACCGCAACTCAACGTCTAGTGACCAGTCGGACCATCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGAAGGCTGAGCAGAAAAGGGCCGAAGCACTCTGGTAAAACTGCAGAAAAAATAACTCAACAGCGACTGAACCTCTACCGGAGATCCGAAAGACAGGAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCGACGGTGGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'34-32,'34-30,35-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATACCAGGATCGGGGTTT
R:
TCTCCGGTAGAGGTTCAGTCG
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: