DmeEX6009769 @ dm6

Exon Skipping

Gene

Description

The gene slowpoke 2 is referred to in FlyBase by the symbol DmelSLO2 (CG42732, FBgn0261698). It is a protein_coding_gene from Dmel. It has 10 annotated transcripts and 10 polypeptides (9 unique). Gene sequence location is 2R:10322195..10416996. Its molecular function is described by: calcium-activated potassium channel activity; outward rectifier potassium channel activity; intracellular sodium activated potassium channel activity. It is involved in the biological process described with: potassium ion transmembrane transport; potassium ion transport. 21 alleles are reported. The phenotypes of these alleles manifest in: mesothoracic tergum; ganglion mother cell; trichogen cell. The phenotypic classes of alleles include: phenotype; increased mortality; increased mortality during development; some die during P-stage.

Coordinates

chr2R:10325689-10329229:-

Coord C1 exon

chr2R:10329044-10329229

Coord A exon

chr2R:10328858-10328989

Coord C2 exon

chr2R:10325689-10325894

Length

132 bp

Sequences

Splice sites

3' ss Seq

CATAACTTTATCATCCGTAGATG

3' ss Score

8.31

5' ss Seq

CATGTGAGT

5' ss Score

7.83

Exon sequences

Seq C1 exon

CGCGAGAAGGAGCGCGGGTCGCATATCTCCTATATGTTCCGTCTGCCCTTTGCCGCAGGAGCCGTGTTCAGTGCCTCCATGTTGGACACCCTGCTGTACCAGGCCTTCGTGAAGGACTATGTGATTACCTTTGTGCGGTTGCTGCTTGGCATTGACCAGGCGCCGGGCAGTGGGTTCTTGACCTCG

Seq A exon

ATGCGCATCACCAAGGACGACATGTGGATACGCACCTATGGTCGGCTGTACCAGAAGCTGTGCTCCACCACCTGCGAAATACCCATTGGCATTTACCGCACGCAGGACACCTCGAATGCGGACACGTCTCAT

Seq C2 exon

TACTCCATCAATCTGGCCGACGAGGCGAGGGATAACCACGCTCAGCAGATCGAGCGGGCGGAGATCGCGAATCTCGTGCGAAGTCGGATGGAGTCTCTGAATCTACCCACGATCGACTACGACGATGTGAGCGAGAAACGCAACCACCTGTCCTATGTGATAATCAACCCGAGCTGTGATCTCAAACTGGAGGAAGGCGATCTCAT

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0261698-'33-41,'33-39,34-41=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features