RnoEX6015924 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3357062-3357749:+
Coord C1 exon
chr3:3357062-3357145
Coord A exon
chr3:3357270-3357395
Coord C2 exon
chr3:3357729-3357749
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCTCACTCGCTGCAGATG
3' ss Score
9.81
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
TCCTTCGTGAAGGACTACATGATCACCATCACCAGGCTGCTGCTGGGCCTTGACACGACGCCAGGCTCTGGCTACCTCTGTGCT
Seq A exon
ATGAAGGTAACTGAGGATGACCTGTGGATCCGTACTTATGGCCGCCTCTTCCAGAAACTCTGCTCCTCCAGCGCTGAGATCCCCATCGGCATCTACAGGACCGAGTGCCATGTCTTCTCCTCTGAG
Seq C2 exon
CCTCATGACCTCAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'34-54,'34-52,35-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGGACTACATGATCACCA
R:
CTGGGCTCTGAGGTCATGAGG
Band lengths:
100-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]