MmuEX6099654 @ mm10
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25909594-25910286:+
Coord C1 exon
chr2:25909594-25909677
Coord A exon
chr2:25909814-25909936
Coord C2 exon
chr2:25910266-25910286
Length
123 bp
Sequences
Splice sites
3' ss Seq
GAGATTCCCACTCGTTGCAGATG
3' ss Score
7.16
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
TCCTTCGTGAAGGACTACATGATCACCATCACCAGGCTGCTCTTGGGCCTTGATACTACACCAGGCTCCGGCTACCTCTGTGCA
Seq A exon
ATGAAGGTAACCGAGGACGACCTGTGGATCCGCACTTACGGCCGCCTCTTCCAGAAACTCTGCTCCTCCAGCGCCGAGATCCCCATCGGCATCTACAGGACCGAGTGCCATGTCTTCTCGGAG
Seq C2 exon
CCCCATGACGTCAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-'43-82,'43-74,51-82=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGGACTACATGATCACCA
R:
CTGGGCTCTGACGTCATGGG
Band lengths:
100-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types